PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS537163.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 158aa    MW: 18113.6 Da    PI: 7.1973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS537163.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.4e-1236874499
                  -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  + Wev+l   ++ ++++l++GW +Fvk   ++ g f+vF+++g s f  +v +f+k
  EcS537163.10 36 QAWEVEL--VRRTDGVWLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RVVIFDK 87
                  78*****..99999****************************99999..9999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023628.0E-93687IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-133688IPR015300DNA-binding pseudobarrel domain
CDDcd100173.86E-103686No hitNo description
SuperFamilySSF1019367.85E-133788IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.9553888IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
ILCFHAHHAT GNSKEIREKI WEQSVGLGLP PATQCQAWEV ELVRRTDGVW LRRGWPDFVK  60
HYAIEHGHFL VFRYEGGSAF RVVIFDKSAS EIKYPIITEL PKREENEGDT LVEVFEDHFD  120
RPLRIQSKEL PSSTLLSPPS KKKKTNECLN KQEVGGSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026401.12e-77PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A059AZI73e-61A0A059AZI7_EUCGR; Uncharacterized protein
STRINGVIT_07s0255g00070.t011e-15(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-17B3 family protein